whole genome resequencing of Chinese cattle, Red Angus cattle and Japanese Black cattle
Bos Indicus introgression
In order to get specific introgression regions in QCC(Qinchuan cattle), the following filter condition was used to extract specific variants. 1)Non-reference frequency of QCC should more than 0.1; 2) Non-reference frequency should be 1 in LQC(Leiqiong cattle) and 0 in JBC(Japanese Black cattle) and RAN(Red Angus cattle) across the entire genome. Frequency distributions were performed to search introgression from Bos indicus. You can download these whole genome files attachment bellow.
download：.Introgression from indicine into Qinchuan cattle.zip
Selection signals in the whole genome
Selection signals of these Files include FST, Tajima’s D and XPEHH about Japanese Black cattle vs QinChuan cattle and Red Angus cattle vs QinChuan cattle. You can download these files attachment bellow.
download：selection sigals of whole genome.zip
Japanese Black cattle
Red Angus cattle